Note: All Google Colab notebooks can be run by selecting Runtime > Run all > Run anyway within the notebook.


Getting started

Downloading data

  • Tutorial (browser, command line, and kb on Google Colab)

Aggregating multiple count matrices

  • Tutorial (kb and python on Google Colab)

Multiple FASTQs

  • Tutorial (command line and kb on Google Colab)

Multi-species experiments

Feature barcoding

  • Tutorial (kb and python on Google Colab)

Parsing bus files

Pre-processing single-nuclei RNA-seq

Pseudotime

RNA velocity